BiasAway
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Table of contents

  • Introduction
  • Installation
  • How to use BiasAway
  • BiasAway modules
  • BiasAway web-server
  • Support
  • Citation
BiasAway
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BiasAway DocumentationΒΆ

Welcome to BiasAway - an open-source command-line tool and web-server that provide four approaches to generate nucleotide composition-matched DNA sequences.

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Table of contents

  • Introduction
  • Installation
    • Quick installation
    • Prerequisites
    • Install BiasAway using conda
    • Install BiasAway using pip
    • Install BiasAway from source
  • How to use BiasAway
  • BiasAway modules
    • K-mer shuffling
    • K-mer shuffling within a sliding window
    • Genomic mononucleotide distribution matched
    • Genomic mononucleotide distribution within a sliding window matched
  • BiasAway web-server
    • Introduction
    • K-mer shuffling
    • K-mer shuffling within a sliding window
    • Genomic mononucleotide distribution matched
    • Genomic mononucleotide distribution within a sliding window matched
    • Example result page and QC plots
    • Generation of background repositories
    • Availability
  • Support
  • Citation
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© Copyright 2020, Aziz Khan and Anthony Mathelier Revision 29ebd297.

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