How to use BiasAway

Once you have installed BiasAway, you can type:

biasaway --help

It will print the main help, which lists the six subcommands/modules: k, w, g, and c.

usage: biasaway <subcommand> [options]

positional arguments <subcommand>: {k,w,g,c}

        List of subcommands
        k       k-mer shuffling
        w       k-mer shuffling within a sliding window
        g       mononucleotide distribution matched
        c       mononucleotide distribution within a sliding window matched

optional arguments:
  -h, --help            show this help message and exit
  -v, --version         show program's version number and exit

To view the help for the individual subcommands, please type:

Note

Please check BiasAway modules to see a detailed summary of available options.

To view k module help, type

biasaway k --help

To view w module help, type

biasaway w --help

To view g module help, type

biasaway g --help

To view c module help, type

biasaway c --help