BiasAway Documentation

Welcome to BiasAway - an open-source command-line tool and web-server that provide four approaches to generate nucleotide composition-matched DNA sequences.

Table of contents

• Introduction
• Installation
  • Quick installation
  • Prerequisites
  • Install BiasAway using conda
  • Install BiasAway using pip
  • Install BiasAway from source
• How to use BiasAway
• BiasAway modules
  • K-mer shuffling
  • K-mer shuffling within a sliding window
  • Genomic mononucleotide distribution matched
  • Genomic mononucleotide distribution within a sliding window matched
• BiasAway web-server
  • Introduction
  • K-mer shuffling
  • K-mer shuffling within a sliding window
  • Genomic mononucleotide distribution matched
  • Genomic mononucleotide distribution within a sliding window matched
  • Example result page and QC plots
  • Generation of background repositories
  • Availability
• Support
• Citation